CASE REPORT: PURA SYNDROME CAUSED BY A DE NOVO c.345_346del VARIANT IN A 6-YEAR-OLD BOY WITH REFRACTORY EPILEPSY AND DIAGNOSTIC DELAY

Authors

DOI:

https://doi.org/10.31435/ijitss.3(51).2026.6390

Keywords:

PURA Syndrome, Refractory Epilepsy, Diagnostic Odyssey, Exome Sequencing

Abstract

Background: PURA syndrome is a rare neurodevelopmental disorder caused by heterozygous pathogenic variants in the PURA gene, characterized by neonatal hypotonia, epilepsy, and developmental delay. Diagnostic delay is common when acquired neonatal insults co-exist and mask the underlying genetic etiology.

Methods: We describe a 6-year-old boy with a de novo PURA c.345_346del (p.Asp116LeufsTer84) variant identified by trio clinical exome sequencing after negative SCO2 sequencing and chromosomal microarray. Clinical course, EEFeG, neuroimaging, and 6-year follow-up were analyzed retrospectively.

Results: The patient presented with hypotonia, feeding difficulties, and neonatal seizures complicated by bacterial meningitis, grade I intraventricular hemorrhage, and hyperbilirubinemia. Seizures evolved into refractory epilepsy with tonic, hypermotor, and focal impaired awareness seizures despite four antiseizure medications. Additional features included non-verbal status, GMFCS V, strabismus, cryptorchidism, and hypothyroidism requiring replacement therapy.

Conclusion: Co-occurring acquired insults may mask monogenic etiology and prolong diagnostic odyssey. Early access to exome sequencing and multidisciplinary follow-up are critical for family counseling and care planning.

References

Lalani, S. R., Zhang, J., Schaaf, C. P., Brown, C. W., Magoulas, P., Tsai, A. C., El-Gharbawy, A., Wierenga, K. J., Bartholomew, D., Fong, C. T., Barbaro-Dieber, T., Kukolich, M. K., Burrage, L. C., Austin, E., Keller, K., Pastore, M., Fernandez, F., Lotze, T., Wilfong, A., … Xia, F. (2014). Mutations in PURA cause profound neonatal hypotonia, seizures, and encephalopathy in 5q31.3 microdeletion syndrome. American Journal of Human Genetics, 95(5), 579–583. https://doi.org/10.1016/j.ajhg.2014.09.014

Hunt, D., Leventer, R. J., Simons, C., Taft, R., Swoboda, K. J., Gawne-Cain, M., Magee, A. C., Turnpenny, P. D., & Baralle, D. (2014). Whole exome sequencing in family trios reveals de novo mutations in PURA as a cause of severe neurodevelopmental delay and learning disability. Journal of Medical Genetics, 51(12), 806–813. https://doi.org/10.1136/jmedgenet-2014-102798

Afshar, S., Ahmed, W., Celik, E., Younis, S. S., Campbell, C., Potluri, Y. K. R., Kaur, J., Meda, D. S., Manjari, K. K., Khachikian, A., Leena, J., & Rai, M. (2026). PURA-related neurodevelopmental disorder: A comprehensive clinical review of genetics, phenotype, and emerging therapeutic strategies. Cureus, 18(3), e105181. https://doi.org/10.7759/cureus.105181

Reijnders, M. R. F., Janowski, R., Alvi, M., Self, J. E., van Essen, T. J., Vreeburg, M., Rouhl, R. P. W., Stevens, S. J. C., Stegmann, A. P. A., Schieving, J., Pfundt, R., van Dijk, K., Smeets, E., Stumpel, C. T. R. M., Bok, L. A., Cobben, J. M., Engelen, M., Mansour, S., Whiteford, M., … Baralle, D. (2018). PURA syndrome: Clinical delineation and genotype-phenotype study in 32 individuals with review of published literature. Journal of Medical Genetics, 55(2), 104–113. https://doi.org/10.1136/jmedgenet-2017-104948

Lee, B. H., Reijnders, M. R. F., Abubakare, O., Tuttle, E., Lape, B., Minks, K. Q., Stodgell, C., Bennetto, L., Kwon, J., Fong, C. T., Gripp, K. W., Marsh, E. D., Smith, W. E., Huq, A. M., Coury, S. A., Tan, W. H., Solis, O., Mehta, R. I., Leventer, R. J., … Paciorkowski, A. R. (2018). Expanding the neurodevelopmental phenotype of PURA syndrome. American Journal of Medical Genetics Part A, 176(1), 56–67. https://doi.org/10.1002/ajmg.a.38521

Liu, S. N., Chi, C. S., Lee, H. F., Tsai, C. R., Yang, Y. L., & Wu, P. Y. (2025). Genotype-phenotype variations in PURA syndrome: Asian and non-Asian perspectives from a systematic review. Orphanet Journal of Rare Diseases, 20, 376. https://doi.org/10.1186/s13023-025-03908-9

Bergemann, A. D., Ma, Z. W., Bhatt, A., Bhatt, A. M., & Johnson, E. M. (2017). Sequence-specific single-stranded-DNA-binding protein Pur-alpha is essential for mesoderm development in Drosophila. Gene, 624, 1–7. https://doi.org/10.1016/j.gene.2017.12.004

Khalili, K., Del Valle, L., Wang, J. Y., Reiss, K., Darbinian, N., Amini, S., & Johnson, E. M. (2003). Pur-alpha is essential for postnatal brain development and is involved in the pathogenesis of brain tumors. Developmental Neuroscience, 25(4), 232–242. https://doi.org/10.1159/000073753

Hokkanen, S., Feldmann, H. M., Ding, H., Jung, C. K., Bojarski, L., Renner-Müller, I., Schüller, U., Kretzschmar, H., Wolf, E., & Herms, J. (2012). Lack of Pur-alpha alters postnatal brain development and causes megalencephaly. Human Molecular Genetics, 21(3), 473–484. https://doi.org/10.1093/hmg/ddr476

Proske, M., Janowski, R., Bacher, S., Kang, H. S., Monecke, T., Koehler, T., Hutten, S., Tretter, J., Crois, A., Molitor, L., Varela-Rial, A., Fino, R., Donati, E., De Fabritiis, G., Dormann, D., Sattler, M., & Niessing, D. (2024). PURA syndrome-causing mutations impair PUR-domain integrity and affect P-body association. eLife, 13, RP93561. https://doi.org/10.7554/eLife.93561

Kobak, J., Szczupak, M., Czerkiewicz, K., Bielocerkowski, S., & Krupa-Nurcek, S. (2025). PURA syndrome—A genetic cause of a neurodevelopmental disorder—Case report. Frontiers in Pediatrics, 13, 1607213. https://doi.org/10.3389/fped.2025.1607213

Fukuda, Y., Kudo, Y., Saito, M., Kaname, T., Oota, T., & Shoji, R. (2022). Expanding the PURA syndrome phenotype with manifestations in a Japanese female patient. Human Genome Variation, 9(1), 11. https://doi.org/10.1038/s41439-022-00189-7

Hildebrand, M. S., Braden, R. O., Lauretta, M. L., Kaspi, A., Leventer, R. J., Anderson, M., Calvert, S., Hobson, C. S., Jolley, A., Lockhart, P. J., & Scheffer, I. E. (2024). Inherited PURA pathogenic variant associated with a mild neurodevelopmental disorder. Neurology: Genetics, 10(5), e200181. https://doi.org/10.1212/NXG.000000000000200181

Lee, S., Kim, S. H., Kim, H. D., Lee, J. S., Ko, A., & Kang, H. C. (2024). Genetic diagnosis in neonatal encephalopathy with hypoxic brain damage. Journal of Clinical Neurology, 20(5), 519–528. https://doi.org/10.3988/jcn.2023.0500

Manickam, K., McClain, M. R., Demmer, L. A., Biswas, S., Kearney, H. M., Malinowski, J., Deverka, P., Yashar, B. M., Azzariti, A. M., Duchardt-Fernandez, E. M., & Miller, D. T. (2021). Exome and genome sequencing for pediatric patients with congenital anomalies or intellectual disability: An evidence-based clinical guideline of the American College of Medical Genetics and Genomics (ACMG). Genetics in Medicine, 23(11), 2029–2037. https://doi.org/10.1038/s41436-021-01267-z

Choi, S. A., Lee, H. S., Park, T. J., Park, S., Ko, Y. J., Kim, S. Y., Kim, W. S., Lim, B. C., Hwang, H., Chae, J. H., & Kim, S. H. (2021). Expanding the clinical phenotype and genetic spectrum of PURA-related neurodevelopmental disorders. Brain & Development, 43(9), 912–918. https://doi.org/10.1016/j.braindev.2021.05.001

Richards, S., Aziz, N., Bale, S., Bick, D., Das, S., Gastier-Foster, J., Grody, W. W., Hegde, M., Lyon, E., Spector, E., Voelkerding, K., & Rehm, H. L. (2015). Standards and guidelines for the interpretation of sequence variants: A joint consensus recommendation of the American College of Medical Genetics and the Association for Molecular Pathology. Genetics in Medicine, 17(5), 405–424. https://doi.org/10.1038/gim.2015.30

Boczek, N. J., Macke, E. L., Kemppainen, J., Klee, E. W., Renaud, D. L., & Gavrilova, R. H. (2020). Expansion of PURA-related phenotypes and discovery of a novel PURA variant: A case report. Child Neurology Open, 7, 2329048X20955003. https://doi.org/10.1177/2329048X20955003

Johannesen, K. M., Gardella, E., Gjerulfsen, C. E., Bayat, A., Rouhl, R. P. W., Reijnders, M., Whalen, S., Keren, B., Buratti, J., Courtin, T., Wierenga, K. J., Isidor, B., Piton, A., Faivre, L., Garde, A., Moutton, S., Tran-Mau-Them, F., Denommé-Pichon, A. S., Coubes, C., … Rubboli, G. (2021). PURA-related developmental and epileptic encephalopathy: Phenotypic and genotypic spectrum. Neurology: Genetics, 7(6), e613. https://doi.org/10.1212/NXG.0000000000000613

Kofoed, A. W. S., Kristiansen, S. S., Miranda, M. J., Rubboli, G., & Johannesen, K. M. (2024). Differences in manifestations of epilepsy and developmental delay in PURA syndrome and 5q31 microdeletions. Clinical Genetics, 106(4), 386–393. https://doi.org/10.1111/cge.14581

Crippa, A. C. S., Bacheladenski, E. P., Rodrigues, D. C. B., Ferreira, L. P., Meira, A. T., & Franklin, G. L. (2023). Movement disorders in PURA syndrome: A video case series. Movement Disorders Clinical Practice, 10(10), 1542–1546. https://doi.org/10.1002/mdc3.13804

Dai, W., Sun, Y., Fan, Y., Gao, Y., Zhan, Y., Wang, L., Wu, X., Jiang, Y., Wang, J., Zhang, Y., Wang, J., & Wang, H. (2023). A 25 mainland Chinese cohort of patients with PURA-related neurodevelopmental disorders: Clinical delineation and genotype-phenotype correlations. European Journal of Human Genetics, 31(1), 112–121. https://doi.org/10.1038/s41431-022-01018-1

Falsaperla, R., Sortino, V., Schinocca, M. A., Fusto, G., Rizzo, R., Barberi, C., Pratico, A. D., & Pavone, P. (2024). PURA-related neurodevelopmental disorders with epilepsy treated with ketogenic diet: A case-based review. Genes, 15(7), 848. https://doi.org/10.3390/genes15070848

Wyrebek, R., DiBartolomeo, M., Brooks, S., Geller, T., Crenshaw, M., & Iyadurai, S. (2022). Hypotonic infant with PURA syndrome-related channelopathy successfully treated with pyridostigmine. Neuromuscular Disorders, 32(2), 166–169. https://doi.org/10.1016/j.nmd.2022.01.005

Abou Tayoun, A. N., Pesaran, T., DiStefano, M. T., Oza, A., Rehm, H. L., Biesecker, L. G., Green, R. C., Berg, J. S., & Plon, S. E. (2018). Recommendations for interpreting the loss of function PVS1 ACMG/AMP variant criterion. Human Mutation, 39(11), 1517–1524. https://doi.org/10.1002/humu.23626

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Published

2026-08-21

How to Cite

Wójtowicz, B., Skrzypek, S., Okoń, P., Niczyporuk, J., Kubiszewski, H., Szukała, K., & Chrościńska- Krawczyk, M. (2026). CASE REPORT: PURA SYNDROME CAUSED BY A DE NOVO c.345_346del VARIANT IN A 6-YEAR-OLD BOY WITH REFRACTORY EPILEPSY AND DIAGNOSTIC DELAY. International Journal of Innovative Technologies in Social Science, 1(3(51). https://doi.org/10.31435/ijitss.3(51).2026.6390